PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn268801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 198aa    MW: 21500 Da    PI: 5.0227
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn268801genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.1e-101255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W++e d+ + +a + ++ +   +W++Ia+ ++ g+t +++k+++ 
       Achn268801 12 WSKEQDKSFENALATYPEEsldRWEKIAADVQ-GKTFEEIKHHYE 55
                     *****************99*************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.841458IPR017877Myb-like domain
SMARTSM007172.0E-6860IPR001005SANT/Myb domain
SuperFamilySSF466896.77E-111065IPR009057Homeodomain-like
PfamPF002495.4E-81255IPR001005SANT/Myb domain
CDDcd001671.27E-71258No hitNo description
Gene3DG3DSA:1.10.10.601.2E-41256IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTADESNNSS GWSKEQDKSF ENALATYPEE SLDRWEKIAA DVQGKTFEEI KHHYELLVDD  60
INDIESGRVP LPCYNSSSDG STSHSGEEGT SKKGGHGGNF NSDSNHGGKA SRSDQERRKG  120
IAWTEDEHSS PEPETRDNEP SRRQVSPKGV AGARTDGDVA RRSLTETVEA CRGHVGPLQV  180
QIEPFRGSSG SVMAHRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1912771176RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221083.12e-68PREDICTED: transcription factor DIVARICATA
TrEMBLD9ZJ765e-68D9ZJ76_MALDO; MYBR domain class transcription factor
STRINGGLYMA18G18140.22e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-38MYB family protein